Basic Information
Locus ID:
Pt_Chr0702512
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 57895036 | 57897571 | - | Pt_Chr0702512 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 40,121.73 Da | 42.17 | 100.44 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF52047 | RNI-like | 9 | 336 | 1.26E-19 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1 | 348 | 9.7E-38 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 266 | 291 | 5.5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 167 | 206 | 440.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 23 | 49 | 120.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 141 | 166 | 10.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 316 | 341 | 180.0 | IPR006553 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 23 | 5.0 | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051187305.1 | F-box/LRR-repeat protein 14-like isoform X4 [Lolium perenne] | 0 |
| TrEMBL | A0A3B5ZP51 | F-box domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18288 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26237 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010404 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g218950 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11650, Sbi_jg46748 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20901 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005117 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl56015, Sgl60659, Sgl61208 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000017343, gene:ENSEOMG00000036806 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0009060, CQ.Regalona.r1.9AG0015420 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30129580 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G000770 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723850 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.3116.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G06360, Ftri2G33928 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G80570.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018507m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g35200.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB05g048970.2N, BniB05g075600.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0370 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0391 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g09580 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0592s00004.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g06520 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.788 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00034528 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G37349, Lb0G37350 |
| Poaceae | Echinochloa crus-galli | 4 | BH05.3639, BH06.1580, BH06.1747, CH06.1734 |
| Poaceae | Eleusine coracana subsp. coracana | 10 | gene-QOZ80_2AG0149230, gene-QOZ80_2AG0149240 ... |
| Poaceae | Hordeum vulgare | 8 | HORVU.MOREX.r3.1HG0000530.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 28 | gene-QYE76_002132, gene-QYE76_002133, gene-QYE76_002134 ... |
| Poaceae | Oryza coarctata | 4 | Oco03G024410, Oco04G024890, Oco23G007550, Oco24G007120 |
| Poaceae | Oryza sativa | 11 | LOC_Os02g55540.2, LOC_Os02g55550.1, LOC_Os04g30180.1 ... |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_04G052400, gene-BS78_04G307800 ... |
| Poaceae | Puccinellia tenuiflora | 7 | Pt_Chr0206238, Pt_Chr0702509, Pt_Chr0702511, Pt_Chr0702512 ... |
| Poaceae | Sporobolus alterniflorus | 5 | Chr09G017500, Chr0G009290, Chr13G001670, Chr16G007170 ... |
| Poaceae | Thinopyrum elongatum | 22 | Tel1E01G012900, Tel1E01G013200, Tel1E01G013600 ... |
| Poaceae | Triticum dicoccoides | 35 | gene_TRIDC1AG000530, gene_TRIDC1AG000640 ... |
| Poaceae | Triticum aestivum | 63 | TraesCS1A02G004900.1, TraesCS1A02G005300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb258000_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-39907 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g17341 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.975, evm.TU.LG22.96 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g23870 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.189 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14259 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10047 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14385 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000005l.113 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16905 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19039 |
| Salicaceae | Populus euphratica | 4 | populus_peu01396, populus_peu24213, populus_peu24567 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132630514, gene-LOC132630515 |
| Solanaceae | Solanum chilense | 1 | SOLCI005692300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029388 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.19295_chr07_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2289 |
| Zosteraceae | Zostera marina | 1 | Zosma01g04140.v3.1 |