Basic Information
Locus ID:
Pt_Chr0702454
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Broad-Complex, Tramtrack and Bric a brac
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 56661532 | 56663618 | + | Pt_Chr0702454 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.38 | 74,476.18 Da | 47.22 | 93.99 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 17 | 147 | 2.87724E-4 | IPR002083 |
| CDD | cd00121 | MATH | 393 | 518 | 5.5307E-10 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 185 | 296 | 1.5E-18 | IPR000210 |
| Pfam | PF00651 | BTB/POZ domain | 558 | 619 | 1.6E-8 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 554 | 619 | 2.71E-9 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 389 | 523 | 1.64E-14 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 15 | 150 | 1.96E-7 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 171 | 297 | 1.65E-19 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 301 | 379 | 2.1E-7 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 540 | 650 | 9.1E-24 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 165 | 300 | 2.2E-23 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 390 | 522 | 1.6E-10 | IPR008974 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 13 | 150 | 6.5E-7 | IPR008974 |
| SMART | SM00225 | BTB_4 | 522 | 621 | 0.5 | IPR000210 |
| SMART | SM00225 | BTB_4 | 186 | 299 | 3.6E-17 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 392 | 517 | 10.930226 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 186 | 251 | 14.997496 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39760.2 | BTB/POZ/MATH-domains containing protein. | 0 |
| RefSeq | XP_040259309.1 | BTB/POZ and MATH domain-containing protein 1 [Aegilops tauschii subsp. strangulata] | 0 |
| O22286 | BTB/POZ and MATH domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=BPM3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A077RSJ6 | Speckle-type POZ protein OS=Triticum aestivum OX=4565 GN=TRAES_3BF045600080CFD_c1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_9BG0712650 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0219660.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 12 | gene-QYE76_000351, gene-QYE76_018036, gene-QYE76_020460 ... |
| Poaceae | Puccinellia tenuiflora | 8 | Pt_Chr0100491, Pt_Chr0106602, Pt_Chr0206622, Pt_Chr0206755 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G840100 |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC3AG009110, gene_TRIDC3AG071980 ... |
| Poaceae | Triticum aestivum | 11 | TraesCS3A02G009700.1.cds1, TraesCS3A02G076600.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb418740_P001 |