Basic Information
Locus ID:
Pt_Chr0702451
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 56498241 | 56502556 | + | Pt_Chr0702451 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.74 | 132,743.31 Da | 50.84 | 92.77 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 6 | 137 | 1.56611E-6 | IPR002083 |
| CDD | cd00121 | MATH | 681 | 810 | 6.73361E-5 | IPR002083 |
| CDD | cd14733 | BACK | 1147 | 1186 | 8.64485E-5 | - |
| CDD | cd00121 | MATH | 385 | 510 | 2.1032E-9 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 1030 | 1144 | 8.8E-16 | IPR000210 |
| Pfam | PF00651 | BTB/POZ domain | 861 | 979 | 2.2E-20 | IPR000210 |
| Pfam | PF00651 | BTB/POZ domain | 175 | 288 | 4.2E-22 | IPR000210 |
| Pfam | PF00651 | BTB/POZ domain | 537 | 641 | 3.2E-14 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 172 | 288 | 9.22E-22 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 4 | 140 | 1.24E-8 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 524 | 642 | 5.89E-20 | IPR011333 |
| SUPERFAMILY | SSF54695 | POZ domain | 860 | 979 | 4.32E-22 | IPR011333 |
| SUPERFAMILY | SSF54695 | POZ domain | 1017 | 1174 | 2.79E-22 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 381 | 516 | 1.96E-14 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 683 | 813 | 6.38E-8 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 514 | 674 | 1.1E-35 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 1009 | 1175 | 6.1E-37 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 291 | 371 | 2.9E-8 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 680 | 813 | 7.2E-8 | IPR008974 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 149 | 290 | 8.8E-26 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 382 | 513 | 9.3E-10 | IPR008974 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 4 | 140 | 2.1E-7 | IPR008974 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 817 | 1008 | 5.2E-30 | IPR011333 |
| SMART | SM00225 | BTB_4 | 862 | 981 | 8.1E-19 | IPR000210 |
| SMART | SM00225 | BTB_4 | 1038 | 1146 | 1.3E-13 | IPR000210 |
| SMART | SM00225 | BTB_4 | 546 | 642 | 6.7E-12 | IPR000210 |
| SMART | SM00225 | BTB_4 | 176 | 291 | 8.8E-21 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 862 | 930 | 17.562063 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 384 | 509 | 10.444407 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 546 | 609 | 11.626329 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 176 | 243 | 17.251833 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 1038 | 1105 | 14.563173 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19000.1 | BTB-POZ and MATH domain 1. | 0 |
| RefSeq | XP_040259309.1 | BTB/POZ and MATH domain-containing protein 1 [Aegilops tauschii subsp. strangulata] | 0 |
| Q8L765 | BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A077RSJ6 | Speckle-type POZ protein OS=Triticum aestivum OX=4565 GN=TRAES_3BF045600080CFD_c1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Puccinellia tenuiflora | 7 | Pt_Chr0206757, Pt_Chr0604801, Pt_Chr0604803, Pt_Chr0604807 ... |