Basic Information
Locus ID:
Pt_Chr0702317
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Leucine-rich repeat receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 52140379 | 52152767 | - | Pt_Chr0702317 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 73,833.25 Da | 33.88 | 94.39 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 30 | 301 | 5.8E-54 | IPR000719 |
| Pfam | PF00092 | von Willebrand factor type A domain | 379 | 545 | 6.7E-18 | IPR002035 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 10 | 304 | 3.91E-66 | IPR011009 |
| SUPERFAMILY | SSF53300 | vWA-like | 373 | 529 | 5.04E-23 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 366 | 548 | 9.9E-26 | IPR036465 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 120 | 320 | 1.2E-45 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 2 | 102 | 1.2E-27 | - |
| SMART | SM00220 | serkin_6 | 28 | 310 | 2.7E-33 | IPR000719 |
| SMART | SM00327 | VWA_4 | 377 | 543 | 1.1E-14 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 379 | 549 | 15.518404 | IPR002035 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 28 | 310 | 36.739227 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 160 | 172 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 34 | 56 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00960.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_051226700.1 | uncharacterized protein LOC127344445 isoform X2 [Lolium perenne] | 0 |
| O23082 | Cysteine-rich receptor-like protein kinase 44 OS=Arabidopsis thaliana OX=3702 GN=CRK44 PE=3 SV=2 | 0 | |
| TrEMBL | A0A3L6T198 | Protein kinase domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM05G06960 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH04.2252, CH04.2661 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0221540.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_049244 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0702314, Pt_Chr0702315, Pt_Chr0702317 |
| Poaceae | Triticum aestivum | 2 | TraesCS3D02G022700.2, TraesCS7B02G357700.1 |