Basic Information
Locus ID:
Pt_Chr0702315
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 52130398 | 52139115 | - | Pt_Chr0702315 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 36,448.12 Da | 28.52 | 99.53 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 34 | 298 | 2.6E-50 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 10 | 301 | 1.24E-66 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 2 | 103 | 8.7E-27 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 117 | 311 | 1.0E-42 | - |
| SMART | SM00220 | serkin_6 | 33 | 299 | 1.8E-29 | IPR000719 |
| PIRSF | PIRSF000654 | ILK | 3 | 310 | 1.8E-28 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 33 | 311 | 35.142082 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 157 | 169 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 39 | 61 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00960.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_051226700.1 | uncharacterized protein LOC127344445 isoform X2 [Lolium perenne] | 0 |
| O23082 | Cysteine-rich receptor-like protein kinase 44 OS=Arabidopsis thaliana OX=3702 GN=CRK44 PE=3 SV=2 | 0 | |
| TrEMBL | A0A3B6SQS1 | Protein kinase domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH04.2252, CH04.2661 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0221540.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_049244 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0702314, Pt_Chr0702315, Pt_Chr0702317 |
| Poaceae | Triticum aestivum | 2 | TraesCS3D02G022700.2, TraesCS7B02G357700.1 |