Basic Information
Locus ID:
Pt_Chr0702313
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
von Willebrand factor type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 52087052 | 52088568 | - | Pt_Chr0702313 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.95 | 52,237.31 Da | 30.29 | 88.14 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00092 | von Willebrand factor type A domain | 35 | 197 | 7.3E-20 | IPR002035 |
| SUPERFAMILY | SSF53300 | vWA-like | 28 | 205 | 4.58E-28 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 35 | 205 | 1.3E-28 | IPR036465 |
| SMART | SM00327 | VWA_4 | 33 | 205 | 2.8E-20 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 35 | 203 | 16.733528 | IPR002035 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 461 | 479 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 460 | 479 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22680.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_044959481.1 | E3 ubiquitin-protein ligase WAV3-like [Hordeum vulgare subsp. vulgare] | 0 |
| Q9ZQ46 | E3 ubiquitin-protein ligase WAVH1 OS=Arabidopsis thaliana OX=3702 GN=WAVH1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A287VC55 | Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology