Basic Information
Locus ID:
Pt_Chr0702261
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 50261601 | 50266515 | - | Pt_Chr0702261 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.31 | 41,836.40 Da | 58.06 | 88.11 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 3.05432E-28 | - |
| Pfam | PF00627 | UBA/TS-N domain | 347 | 383 | 3.7E-9 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 266 | 322 | 2.8E-20 | IPR015360 |
| Pfam | PF00240 | Ubiquitin family | 4 | 76 | 2.3E-16 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 166 | 203 | 2.0E-13 | IPR015940 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 94 | 8.56E-21 | IPR029071 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 262 | 328 | 6.15E-20 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 330 | 390 | 3.9E-13 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 150 | 209 | 3.16E-10 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 158 | 208 | 8.6E-20 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 340 | 387 | 2.5E-20 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 255 | 322 | 1.0E-23 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 79 | 1.1E-23 | - |
| SMART | SM00165 | uba_6 | 165 | 205 | 4.6E-5 | IPR015940 |
| SMART | SM00165 | uba_6 | 348 | 385 | 3.8E-7 | IPR015940 |
| SMART | SM00727 | CBM | 264 | 307 | 1.0E-6 | IPR006636 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 2.3E-18 | IPR000626 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 390 | 3.9E-107 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 346 | 386 | 12.860156 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 164 | 206 | 12.33002 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 19.499079 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 359 | 373 | 1.8E-30 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 342 | 358 | 1.8E-30 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 292 | 314 | 1.8E-30 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 374 | 389 | 1.8E-30 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 118 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_044947247.1 | probable ubiquitin receptor RAD23 isoform X1 [Hordeum vulgare subsp. vulgare] | 0 |
| Q40742 | Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica OX=39947 GN=RAD23 PE=1 SV=2 | 0 | |
| TrEMBL | A0A453KSR9 | Ubiquitin receptor RAD23 OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology