Basic Information
Locus ID:
Pt_Chr0702068
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 44759079 | 44778263 | + | Pt_Chr0702068 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 100,729.33 Da | 47.11 | 92.27 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 819 | 855 | 1.4E-5 | IPR001680 |
| Pfam | PF00069 | Protein kinase domain | 138 | 318 | 2.9E-23 | IPR000719 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 768 | 862 | 3.66E-13 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 117 | 377 | 1.78E-41 | IPR011009 |
| SUPERFAMILY | SSF49354 | PapD-like | 603 | 739 | 1.05E-11 | IPR008962 |
| Gene3D | G3DSA:2.130.10.10 | - | 766 | 873 | 9.9E-16 | IPR015943 |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 603 | 734 | 1.1E-12 | IPR013783 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 100 | 209 | 3.5E-21 | - |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 446 | 577 | 2.2E-10 | IPR013783 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 229 | 385 | 1.2E-19 | - |
| SMART | SM00320 | WD40_4 | 816 | 855 | 1.4E-8 | IPR001680 |
| ProSiteProfiles | PS50202 | Major sperm protein (MSP) domain profile. | 610 | 731 | 12.11142 | IPR000535 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 823 | 855 | 14.518635 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 138 | 384 | 20.654734 | IPR000719 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 823 | 855 | 11.998316 | - |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 144 | 166 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 394 | 419 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 394 | 414 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38830.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 26. Encodes a cysteine-rich receptor-like protein kinase. | 0 |
| RefSeq | XP_037474509.1 | putative receptor-like protein kinase At4g00960 [Triticum dicoccoides] | 0 |
| Q9T0J1 | Cysteine-rich receptor-like protein kinase 26 OS=Arabidopsis thaliana OX=3702 GN=CRK26 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1C3G5 | Protein kinase domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_002018 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0702008, Pt_Chr0702068 |