Basic Information
Locus ID:
Pt_Chr0702060
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Uncharacterized conserved domain (SAYSvFN)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 44644117 | 44646642 | + | Pt_Chr0702060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.02 | 27,119.90 Da | 47.62 | 97.59 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF10260 | Uncharacterized conserved domain (SAYSvFN) | 166 | 232 | 2.0E-25 | IPR019387 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 20 | 104 | 1.71E-5 | IPR029071 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 29 | 99 | 9.787251 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35360.1 | ubiquitin family protein. | 0 |
| RefSeq | XP_047046607.1 | uncharacterized protein LOC124651597 [Lolium rigidum] | 0 |
| TrEMBL | A0A8I6XFG4 | Ubiquitin-like domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg37343 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2090 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004235 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g106370 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24465, Sbi_jg8314 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11727 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001644 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51406, Sgl56649 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006154, gene:ENSEOMG00000022453 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.5BG0002890 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30028980, pistato.v30029090 |
| Apiaceae | Apium graveolens | 1 | Ag6G00770 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103714031 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.161.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G08763 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G35360.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10017211m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g17580.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g008580.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G0463 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0489 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g07820 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0054s00032.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g05130 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1539 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.703 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002970 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G08726, Lb2G14559, Lb5G28378 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.1230, BH03.1366, CH03.1540 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0523910, gene-QOZ80_6BG0476610 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0480340.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_005379 |
| Poaceae | Oryza coarctata | 1 | Oco18G012410 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g39980.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G084200, gene-BS78_K174900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0702001, Pt_Chr0702060 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr10G004490, Chr11G014460, Chr14G007500, Chr21G007570 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G349400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG034000, gene_TRIDC5BG035880 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G214100.1, TraesCS5B02G209600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb307090_P003 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-43702, nbis-gene-43703 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g29783 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.765, evm.TU.LG17.774 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g27270, gene.Posoc02g19600 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.451 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-22705 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2940 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20099 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000022l.226 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014171 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3365 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6440 |
| Salicaceae | Populus euphratica | 1 | populus_peu34009 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609746 |
| Solanaceae | Solanum chilense | 1 | SOLCI001681800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107027089 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14922 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3772 |
| Zosteraceae | Zostera marina | 1 | Zosma05g21060.v3.1 |