Basic Information
Locus ID:
Pt_Chr0702033
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 43978475 | 43979818 | + | Pt_Chr0702033 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.04 | 47,490.67 Da | 95.18 | 61.81 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 341 | 382 | 2.2E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 337 | 389 | 1.06E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 308 | 388 | 1.1E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 341 | 381 | 2.3E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 341 | 382 | 13.079398 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 180 | 201 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 98 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 232 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 179 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 97 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 149 | 241 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 392 | 415 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60080.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_051187997.1 | pollen-specific leucine-rich repeat extensin-like protein 2 [Lolium perenne] | 0 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453KXT6 | RING-type domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0485230.1.CDS1 |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_005517, gene-QYE76_005518, gene-QYE76_005557 ... |
| Poaceae | Oryza coarctata | 1 | Oco18G006240 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0702033, Pt_Chr0702097 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5AG036790 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G232200.1.cds1, TraesCS5B02G230500.1.cds1 ... |