Basic Information
Locus ID:
Pt_Chr0702008
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 43255208 | 43271100 | + | Pt_Chr0702008 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.49 | 94,529.16 Da | 44.99 | 90.53 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 757 | 793 | 1.3E-5 | IPR001680 |
| Pfam | PF00069 | Protein kinase domain | 135 | 315 | 2.5E-23 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 114 | 374 | 1.5E-41 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 628 | 799 | 1.52E-23 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 598 | 812 | 1.1E-30 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 226 | 384 | 1.0E-19 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 97 | 206 | 3.2E-21 | - |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 440 | 571 | 1.3E-9 | IPR013783 |
| SMART | SM00320 | WD40_4 | 626 | 665 | 0.052 | IPR001680 |
| SMART | SM00320 | WD40_4 | 754 | 793 | 1.4E-8 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 135 | 448 | 21.078753 | IPR000719 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 761 | 793 | 11.998316 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 761 | 793 | 14.518635 | IPR001680 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 141 | 163 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 391 | 416 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 391 | 411 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 33 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38830.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 26. Encodes a cysteine-rich receptor-like protein kinase. | 0 |
| RefSeq | XP_015616470.1 | serine/threonine-protein kinase 3 [Oryza sativa Japonica Group] | 0 |
| Q9T0J1 | Cysteine-rich receptor-like protein kinase 26 OS=Arabidopsis thaliana OX=3702 GN=CRK26 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8J5WL99 | Protein kinase domain-containing protein OS=Zizania palustris OX=103762 GN=GUJ93_ZPchr0011g28837 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0702008, Pt_Chr0702068 |