Basic Information
Locus ID:
Pt_Chr0701996
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Leucine rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 43074175 | 43078296 | - | Pt_Chr0701996 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.11 | 126,181.48 Da | 41.77 | 106.30 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 894 | 1162 | 7.44361E-84 | - |
| Pfam | PF13855 | Leucine rich repeat | 186 | 248 | 2.2E-7 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 744 | 764 | 1.6 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 284 | 341 | 1.5E-6 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 597 | 657 | 3.3E-7 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 890 | 1157 | 2.1E-44 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 872 | 1162 | 1.64E-68 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 143 | 495 | 8.63E-70 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 443 | 789 | 1.88E-61 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 258 | 496 | 9.9E-72 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 184 | 257 | 5.5E-18 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 497 | 820 | 3.9E-85 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 71 | 183 | 3.1E-21 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 960 | 1164 | 8.7E-53 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 847 | 959 | 4.8E-19 | - |
| SMART | SM00369 | LRR_typ_2 | 620 | 643 | 34.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 306 | 330 | 44.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 235 | 258 | 49.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 668 | 691 | 15.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 137 | 160 | 7.4 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 741 | 765 | 36.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 474 | 498 | 200.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 378 | 402 | 200.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 888 | 1160 | 1.6E-33 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 426 | 450 | 70.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 888 | 1165 | 36.767494 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 894 | 916 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1005 | 1017 | - | IPR008271 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 214 | 227 | 1.5E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 741 | 754 | 1.5E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G73080.1 | PEP1 receptor 1. Encodes a leucine-rich repeat receptor kinase. Functions as a receptor for AtPep1 to amplify innate immunity response to pathogen attacks. | 0 |
| RefSeq | XP_047051544.1 | leucine-rich repeat receptor-like protein kinase PEPR2 [Lolium rigidum] | 0 |
| Q9SSL9 | Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana OX=3702 GN=PEPR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6MRM9 | Protein kinase domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2137 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30166990 |
| Arecaceae | Cocos nucifera | 1 | COCNU_10G009110 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103711259, gene-LOC120108963 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1110.V1.1 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g19500 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1251 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00011074, Pov_00034559 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.2526, AH01.2527, BH01.2855, BH01.2857, CH01.3064 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0120090, gene-QOZ80_2AG0120110 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0108800.1, HORVU.MOREX.r3.5HG0480440.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_005384, gene-QYE76_045167, gene-QYE76_045217 |
| Poaceae | Oryza coarctata | 2 | Oco20G001010, Oco20G001020 |
| Poaceae | Oryza sativa | 2 | LOC_Os10g06740.1, LOC_Os10g06760.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G254700, gene-BS78_01G254800 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0301897, Pt_Chr0301916, Pt_Chr0301917, Pt_Chr0701996 ... |
| Poaceae | Sporobolus alterniflorus | 1 | Chr15G016710 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G197400, Tel5E01G350100 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG010300, gene_TRIDC5AG034110 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G090100.1.cds1, TraesCS2B02G105800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb026550_P001, Zm00001eb034800_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-42998 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13073 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g08480 |
| Salicaceae | Populus euphratica | 1 | populus_peu29401 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132631233, gene-LOC132632151, gene-LOC132632152 |
| Solanaceae | Solanum chilense | 2 | SOLCI004878800, SOLCI004878900 |
| Zosteraceae | Zostera marina | 1 | Zosma01g26240.v3.1 |