Basic Information
Locus ID:
Pt_Chr0701929
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
HSF-type DNA-binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 41269496 | 41273964 | + | Pt_Chr0701929 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.56 | 31,578.20 Da | 55.32 | 67.98 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00447 | HSF-type DNA-binding | 14 | 103 | 1.9E-29 | IPR000232 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 10 | 103 | 8.03E-32 | IPR036390 |
| Gene3D | G3DSA:1.10.10.10 | - | 9 | 104 | 3.5E-34 | IPR036388 |
| SMART | SM00415 | hsfneu3 | 10 | 103 | 1.3E-52 | IPR000232 |
| ProSitePatterns | PS00434 | HSF-type DNA-binding domain signature. | 53 | 77 | - | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 65 | 77 | 2.9E-17 | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 52 | 64 | 2.9E-17 | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 14 | 37 | 2.9E-17 | IPR000232 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 137 | 157 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 101 | 119 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 119 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 135 | 157 | - | - |
| Coils | Coil | Coil | 156 | 176 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36990.1 | heat shock factor 4. encodes a protein whose sequence is similar to heat shock factors that regulate the expression of heat shock proteins. Transcript level is increased in response to heat shock. However, overexpression of this gene did not result in the increase of decrease of heat shock proteins. | 0 |
| RefSeq | XP_047050075.1 | heat stress transcription factor B-1-like [Lolium rigidum] | 0 |
| Q67TP9 | Heat stress transcription factor B-1 OS=Oryza sativa subsp. japonica OX=39947 GN=HSFB1 PE=2 SV=1 | 0 | |
| TrEMBL | M8CUB1 | Heat stress transcription factor B-1 OS=Aegilops tauschii OX=37682 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology