Basic Information
Locus ID:
Pt_Chr0701806
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 38385823 | 38398531 | + | Pt_Chr0701806 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.02 | 96,005.14 Da | 60.72 | 64.83 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 410 | 712 | 3.1343E-131 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 409 | 711 | 2.0E-44 | IPR001394 |
| Pfam | PF01753 | MYND finger | 111 | 148 | 1.7E-8 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 108 | 150 | 2.62E-10 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 405 | 717 | 1.57E-83 | IPR038765 |
| Gene3D | G3DSA:6.10.140.2220 | - | 100 | 151 | 1.5E-11 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 402 | 724 | 2.2E-90 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 111 | 148 | 11.429826 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 409 | 714 | 49.888161 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 410 | 425 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 111 | 148 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 792 | 828 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 729 | 745 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 241 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 238 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 271 | 308 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 746 | 767 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 725 | 767 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65450.1 | ubiquitin-specific protease 17. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_051188163.1 | ubiquitin carboxyl-terminal hydrolase 17-like isoform X1 [Lolium perenne] | 0 |
| Q9FKP5 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana OX=3702 GN=UBP17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2K2CRW5 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Brachypodium distachyon OX=15368 GN=100834738 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology