Basic Information
Locus ID:
Pt_Chr0701697
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
F-box associated domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 36434192 | 36455547 | - | Pt_Chr0701697 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.60 | 199,948.08 Da | 49.76 | 86.04 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08268 | F-box associated domain | 281 | 377 | 2.9E-9 | IPR013187 |
| Pfam | PF08268 | F-box associated domain | 844 | 944 | 1.4E-7 | IPR013187 |
| Pfam | PF00646 | F-box domain | 1170 | 1209 | 2.7E-9 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 1373 | 1473 | 7.4E-6 | IPR013187 |
| Pfam | PF00646 | F-box domain | 638 | 678 | 5.2E-10 | IPR001810 |
| Pfam | PF00646 | F-box domain | 78 | 118 | 5.6E-9 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 1168 | 1224 | 1.31E-12 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 634 | 693 | 4.71E-13 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 75 | 134 | 5.1E-16 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 71 | 120 | 3.6E-10 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 631 | 680 | 1.1E-9 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 1163 | 1210 | 6.1E-9 | - |
| SMART | SM00256 | fbox_2 | 641 | 681 | 7.7E-7 | IPR001810 |
| SMART | SM00256 | fbox_2 | 81 | 121 | 2.6E-7 | IPR001810 |
| SMART | SM00256 | fbox_2 | 1173 | 1213 | 3.8E-7 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 172 | 386 | 2.4E-27 | IPR017451 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 732 | 962 | 1.3E-25 | IPR017451 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 1263 | 1475 | 2.8E-24 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1167 | 1212 | 10.610234 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 635 | 682 | 10.477762 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 75 | 122 | 10.477762 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 36 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07870.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_047048149.1 | F-box protein At3g07870-like isoform X2 [Lolium rigidum] | 0 |
| Q9SFC7 | F-box protein At3g07870 OS=Arabidopsis thaliana OX=3702 GN=At3g07870 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0B4E9 | F-box domain-containing protein OS=Oryza glumipatula OX=40148 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology