Basic Information
Locus ID:
Pt_Chr0701696
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
F-box associated domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 36412708 | 36422124 | - | Pt_Chr0701696 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.55 | 126,128.73 Da | 43.08 | 84.59 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00161 | RICIN | 834 | 886 | 5.36745E-4 | IPR000772 |
| Pfam | PF08268 | F-box associated domain | 792 | 888 | 2.0E-7 | IPR013187 |
| Pfam | PF00646 | F-box domain | 592 | 632 | 1.6E-6 | IPR001810 |
| Pfam | PF00646 | F-box domain | 28 | 67 | 1.3E-9 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 231 | 330 | 2.2E-6 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 26 | 81 | 1.7E-13 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 590 | 642 | 3.14E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 576 | 631 | 1.2E-7 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 21 | 70 | 1.4E-9 | - |
| SMART | SM00256 | fbox_2 | 595 | 635 | 0.045 | IPR001810 |
| SMART | SM00256 | fbox_2 | 31 | 71 | 2.2E-6 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 121 | 336 | 3.6E-26 | IPR017451 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 686 | 893 | 3.1E-26 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 25 | 72 | 11.113627 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 589 | 634 | 9.047065 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12560.1 | F-box and associated interaction domains-containing protein. Encodes CPR30 (Constitutive Expresser of PR Genes 30), a F-Box protein that functions as a negative regulator of defense response. | 0 |
| RefSeq | XP_047048153.1 | F-box protein At3g07870-like isoform X5 [Lolium rigidum] | 0 |
| Q9SU30 | F-box protein CPR1 OS=Arabidopsis thaliana OX=3702 GN=CPR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0E0B4E9 | F-box domain-containing protein OS=Oryza glumipatula OX=40148 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology