Basic Information
Locus ID:
Pt_Chr0701629
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Ubiquitin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 35328372 | 35332718 | - | Pt_Chr0701629 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.68 | 96,398.95 Da | 49.21 | 81.71 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 685 | 756 | 2.08621E-5 | - |
| Pfam | PF00931 | NB-ARC domain | 493 | 546 | 7.0E-9 | IPR002182 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 456 | 678 | 4.96E-26 | IPR027417 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 685 | 763 | 1.61E-6 | IPR029071 |
| Gene3D | G3DSA:3.40.50.300 | - | 449 | 596 | 7.2E-16 | IPR027417 |
| Gene3D | G3DSA:3.10.20.90 | - | 674 | 782 | 1.2E-6 | - |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 681 | 763 | 8.872685 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 261 | 286 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 261 | 294 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 99 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 101 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05230.1 | Ubiquitin-like superfamily protein. | 0 |
| RefSeq | XP_037430725.1 | uncharacterized protein LOC119296738 [Triticum dicoccoides] | 0 |
| TrEMBL | A0A3B6KKU5 | Ubiquitin-like domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10029513m.g.v1.0 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.2349, BH03.2480, CH03.2673 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0539190, gene-QOZ80_6BG0492510 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0489850.1.CDS1 |
| Poaceae | Oryza coarctata | 1 | Oco17G007580 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g30390.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G220400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0701629 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr0G015850, Chr14G016030, Chr21G015060 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G412500 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5AG040400 |
| Poaceae | Triticum aestivum | 2 | TraesCS5A02G258000.1.cds1, TraesCS5B02G257200.1.cds1 |
| Poaceae | Zea mays | 1 | Zm00001eb101690_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-10485 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g30519 |