Basic Information
Locus ID:
Pt_Chr0701453
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
NB-ARC domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 31021715 | 31050106 | + | Pt_Chr0701453 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 145,083.88 Da | 52.31 | 86.33 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00931 | NB-ARC domain | 179 | 418 | 3.2E-23 | IPR002182 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 174 | 430 | 5.09E-37 | IPR027417 |
| SUPERFAMILY | SSF52047 | RNI-like | 568 | 876 | 2.43E-22 | - |
| Gene3D | G3DSA:1.20.5.4130 | - | 10 | 123 | 1.6E-7 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 505 | 876 | 4.1E-14 | IPR032675 |
| Gene3D | G3DSA:3.40.50.300 | - | 167 | 281 | 3.3E-15 | IPR027417 |
| Gene3D | G3DSA:1.10.8.430 | - | 326 | 420 | 5.3E-13 | IPR042197 |
| PRINTS | PR00364 | Disease resistance protein signature | 199 | 214 | 1.0E-10 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 698 | 714 | 1.0E-10 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 363 | 377 | 1.0E-10 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1196 | 1227 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 979 | 1011 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1198 | 1226 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1261 | 1278 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1257 | 1278 | - | - |
| Coils | Coil | Coil | 1059 | 1086 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G59780.2 | - | 0 |
| RefSeq | XP_047042921.1 | disease resistance protein RGA5-like, partial [Lolium rigidum] | 0 |
| F7J0N2 | Disease resistance protein RGA5 OS=Oryza sativa subsp. japonica OX=39947 GN=RGA5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B5ZN60 | NB-ARC domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology