Basic Information
Locus ID:
Pt_Chr0701378
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 29101727 | 29118281 | - | Pt_Chr0701378 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.43 | 69,926.70 Da | 68.64 | 82.95 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 590 | 633 | 1.36235E-17 | - |
| Pfam | PF13639 | Ring finger domain | 222 | 265 | 3.3E-12 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 590 | 633 | 8.2E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 216 | 273 | 5.81E-19 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 584 | 636 | 9.59E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 565 | 639 | 2.6E-19 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 201 | 272 | 7.1E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 223 | 264 | 1.4E-6 | IPR001841 |
| SMART | SM00184 | ring_2 | 591 | 632 | 4.7E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 591 | 633 | 11.294285 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 223 | 265 | 11.604098 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G40070.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_051201948.1 | RING-H2 finger protein ATL39-like [Lolium perenne] | 0 |
| Q8W571 | RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3 | 0 | |
| TrEMBL | A0A3B6RHK1 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0701356, Pt_Chr0701378 |