Basic Information
Locus ID:
Pt_Chr0701356
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 28526786 | 28546102 | + | Pt_Chr0701356 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.87 | 70,662.36 Da | 77.19 | 79.23 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 590 | 633 | 3.58198E-16 | - |
| CDD | cd16461 | RING-H2_EL5_like | 222 | 265 | 2.73801E-14 | - |
| Pfam | PF13639 | Ring finger domain | 222 | 265 | 1.4E-11 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 428 | 471 | 3.4E-12 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 590 | 633 | 8.3E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 584 | 639 | 1.92E-18 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 216 | 274 | 4.8E-19 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 422 | 481 | 2.52E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 200 | 272 | 1.4E-18 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 407 | 478 | 7.0E-19 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 565 | 640 | 2.5E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 429 | 470 | 1.4E-6 | IPR001841 |
| SMART | SM00184 | ring_2 | 591 | 632 | 4.7E-6 | IPR001841 |
| SMART | SM00184 | ring_2 | 223 | 264 | 2.7E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 429 | 471 | 11.604098 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 223 | 265 | 11.589345 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 591 | 633 | 11.294285 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G40070.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_051201948.1 | RING-H2 finger protein ATL39-like [Lolium perenne] | 0 |
| Q8W571 | RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3 | 0 | |
| TrEMBL | A0A5J9T940 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_41136 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0701356, Pt_Chr0701378 |