Basic Information
Locus ID:
Pt_Chr0701316
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Short Name:
CPK24
Description:
EF hand
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 27499528 | 27503092 | - | Pt_Chr0701316 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.29 | 65,415.75 Da | 47.97 | 76.30 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 81 | 375 | 3.66281E-116 | - |
| CDD | cd00051 | EFh | 498 | 557 | 9.24689E-18 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 82 | 360 | 2.5E-60 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 497 | 557 | 5.5E-14 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 426 | 482 | 3.0E-9 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 400 | 569 | 5.81E-43 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 79 | 361 | 5.4E-72 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 172 | 381 | 1.0E-51 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 384 | 560 | 2.7E-50 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 84 | 171 | 7.5E-23 | - |
| SMART | SM00054 | efh_1 | 459 | 487 | 0.22 | IPR002048 |
| SMART | SM00054 | efh_1 | 423 | 451 | 0.27 | IPR002048 |
| SMART | SM00220 | serkin_6 | 82 | 376 | 2.9E-77 | IPR000719 |
| SMART | SM00054 | efh_1 | 531 | 559 | 2.1E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 495 | 523 | 0.0023 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 491 | 526 | 13.648647 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 419 | 454 | 14.513405 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 527 | 562 | 14.150764 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 455 | 490 | 9.296966 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 82 | 376 | 43.93343 | IPR000719 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 504 | 516 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 432 | 444 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 88 | 111 | - | IPR017441 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 468 | 480 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 206 | 218 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 540 | 552 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 59 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51850.1 | calcium-dependent protein kinase 13. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_051188813.1 | calcium-dependent protein kinase 22-like [Lolium perenne] | 0 |
| Q69IM9 | Calcium-dependent protein kinase 22 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK22 PE=3 SV=1 | 0 | |
| TrEMBL | A0A3B6LQE6 | Calcium-dependent protein kinase 30 OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology