Basic Information
Locus ID:
Pt_Chr0701253
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Short Name:
CPK24
Description:
EF hand
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 26161672 | 26165324 | - | Pt_Chr0701253 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.67 | 61,964.03 Da | 48.53 | 76.46 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 81 | 343 | 2.71647E-120 | - |
| CDD | cd00051 | EFh | 466 | 525 | 1.54955E-17 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 394 | 450 | 2.8E-9 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 84 | 344 | 4.4E-66 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 465 | 525 | 5.1E-14 | IPR002048 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 79 | 354 | 1.62E-78 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 368 | 537 | 5.25E-43 | IPR011992 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 172 | 353 | 1.3E-58 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 354 | 528 | 2.5E-50 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 84 | 171 | 2.3E-22 | - |
| SMART | SM00054 | efh_1 | 391 | 419 | 0.27 | IPR002048 |
| SMART | SM00054 | efh_1 | 463 | 491 | 0.0023 | IPR002048 |
| SMART | SM00054 | efh_1 | 427 | 455 | 0.22 | IPR002048 |
| SMART | SM00220 | serkin_6 | 82 | 344 | 6.3E-84 | IPR000719 |
| SMART | SM00054 | efh_1 | 499 | 527 | 2.1E-6 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 459 | 494 | 13.648647 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 495 | 530 | 14.150764 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 423 | 458 | 9.296966 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 387 | 422 | 14.513405 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 82 | 344 | 45.346832 | IPR000719 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 508 | 520 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 88 | 111 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 206 | 218 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 436 | 448 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 472 | 484 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 400 | 412 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 58 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51850.1 | calcium-dependent protein kinase 13. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_051188813.1 | calcium-dependent protein kinase 22-like [Lolium perenne] | 0 |
| Q69IM9 | Calcium-dependent protein kinase 22 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK22 PE=3 SV=1 | 0 | |
| TrEMBL | A0A3B6LQE6 | Calcium-dependent protein kinase 30 OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology