Basic Information
Locus ID:
Pt_Chr0701251
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 26149329 | 26156862 | + | Pt_Chr0701251 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 59,270.56 Da | 50.67 | 68.52 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 136 | 186 | 1.1299E-12 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 206 | 266 | 4.2E-14 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 132 | 214 | 5.3E-15 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 206 | 273 | 4.94E-12 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 185 | 483 | 7.4E-38 | - |
| SMART | SM00647 | ibrneu5 | 205 | 266 | 4.4E-21 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 136 | 182 | 8.889546 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 132 | 349 | 27.166464 | IPR044066 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 484 | 521 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 484 | 505 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 506 | 521 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 44 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31510.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_051188810.1 | probable E3 ubiquitin-protein ligase ARI5 [Lolium perenne] | 0 |
| Q84RR0 | Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana OX=3702 GN=ARI7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6KLI1 | RBR-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0701251, Pt_Chr0701314 |