Basic Information
Locus ID:
Pt_Chr0701205
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
UBX domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 25099450 | 25105280 | - | Pt_Chr0701205 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.50 | 61,303.95 Da | 56.11 | 65.37 | -0.82 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01767 | UBX | 479 | 553 | 1.85429E-19 | - |
| CDD | cd14351 | UBA_Ubx1_like | 6 | 42 | 6.52937E-13 | - |
| Pfam | PF14555 | UBA-like domain | 6 | 47 | 2.1E-13 | - |
| Pfam | PF00789 | UBX domain | 474 | 553 | 3.1E-15 | IPR001012 |
| SUPERFAMILY | SSF46934 | UBA-like | 2 | 45 | 1.02E-7 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 437 | 554 | 1.27E-23 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 474 | 555 | 5.8E-24 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 2 | 50 | 2.5E-9 | - |
| SMART | SM00166 | ubx_3 | 470 | 554 | 2.6E-9 | IPR001012 |
| ProSiteProfiles | PS50033 | UBX domain profile. | 473 | 551 | 18.213821 | IPR001012 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 219 | 327 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 430 | 474 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 367 | 394 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 430 | 458 | - | - |
| Coils | Coil | Coil | 408 | 460 | - | - |
| Coils | Coil | Coil | 212 | 232 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11740.1 | Ubiquitin-like superfamily protein. Isolated as a suppressor of a dominant mutant in the Ara4 gene that was expressed in yeast ypt1 mutant strains. A novel protein with a small region of similarity to coil-coiled domain of yeast VSP27 protein. | 0 |
| RefSeq | XP_047047523.1 | plant UBX domain-containing protein 8-like [Lolium rigidum] | 0 |
| F4JPR7 | Plant UBX domain-containing protein 8 OS=Arabidopsis thaliana OX=3702 GN=PUX8 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6KM36 | UBX domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg23426, jg23427, jg23428, jg37153 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14786 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah003780 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g101000 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg23711, Sbi_jg7553 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12482 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001267 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51905, Sgl57197 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006466, gene:ENSEOMG00000023259 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0007770, CQ.Regalona.r1.5BG0008480 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30003810, pistato.v30143660 |
| Apiaceae | Apium graveolens | 2 | Ag6G01806, Ag7G00027 |
| Arecaceae | Cocos nucifera | 2 | COCNU_08G006420, COCNU_09G001490 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103715067, gene-LOC103723707 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_08.391.V1.1, AsparagusV1_08.392.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G04995, Ftri7G11343 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT4G00752.1, AT4G11740.1, AT4G23040.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10028549m.g.v1.0, Thhalv10028647m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g00740.v2.2, Sp6g05690.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB05g057360.2N, BniB08g041620.2N, BniB08g049790.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G0452, Ceq05G0620 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G0556, Cgl05G0639 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g10550 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0202s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g18160 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG04.931, evm.TU.LG10.1346 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00003120 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G10767, Lb2G14094 |
| Poaceae | Echinochloa crus-galli | 6 | AH03.2672, AH08.2282, BH03.2815, BH08.2424, CH03.3017 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0528940, gene-QOZ80_6BG0482950 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0497830.1, HORVU.MOREX.r3.7HG0686940.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_006766, gene-QYE76_030506 |
| Poaceae | Oryza coarctata | 4 | Oco15G013990, Oco16G013180, Oco17G009860, Oco18G009880 |
| Poaceae | Oryza sativa | 2 | LOC_Os08g43300.1, LOC_Os09g35710.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G248600, gene-BS78_07G217100 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0403465, Pt_Chr0403483, Pt_Chr0701205 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr10G013710, Chr11G008640, Chr14G010750, Chr16G018670 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G501200, Tel7E01G473200 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC5AG046530, gene_TRIDC5BG050300 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS5A02G313200.1, TraesCS5B02G314100.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb103170_P001, Zm00001eb198600_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-17590, nbis-gene-31755, nbis-gene-35350 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g23379, Zma_g24478, Zma_g31997, Zma_g32244 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.3433, evm.TU.LG04.3434, evm.TU.LG16.153 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g11720 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_14_RagTag.230, evm.TU.Scaffold_5_RagTag.314 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-10891, nbisL1-mrna-18150 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-14973, nbisL1-mrna-20398 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-10489, nbisL1-mrna-8480 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000006l.545, evm.TU.utg000007l.233 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00013735, Maker00018482 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16071 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10852, nbisL1-mrna-6994 |
| Salicaceae | Populus euphratica | 3 | populus_peu03514, populus_peu27786, populus_peu34345 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132634960 |
| Solanaceae | Solanum chilense | 1 | SOLCI004644900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028743 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_14796, gene_16114 |
| Tamaricaceae | Tamarix chinensis | 6 | TC01G4341, TC02G0168, TC04G2312, TC06G2444, TC09G0594 ... |
| Zosteraceae | Zostera marina | 1 | Zosma05g33400.v3.1 |