Basic Information
Locus ID:
Pt_Chr0701145
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
DNA binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 23418088 | 23429186 | + | Pt_Chr0701145 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.74 | 163,238.48 Da | 47.27 | 80.25 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14798 | RX-CC_like | 179 | 297 | 2.01193E-9 | IPR038005 |
| Pfam | PF18052 | Rx N-terminal domain | 177 | 264 | 1.9E-10 | IPR041118 |
| Pfam | PF03106 | WRKY DNA -binding domain | 1114 | 1172 | 2.9E-22 | IPR003657 |
| Pfam | PF03106 | WRKY DNA -binding domain | 1283 | 1330 | 2.0E-12 | IPR003657 |
| Pfam | PF00931 | NB-ARC domain | 352 | 546 | 5.4E-37 | IPR002182 |
| SUPERFAMILY | SSF52058 | L domain-like | 662 | 997 | 1.5E-15 | - |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 1280 | 1331 | 1.05E-11 | IPR036576 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 1108 | 1174 | 2.48E-21 | IPR036576 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 338 | 587 | 1.87E-49 | IPR027417 |
| Gene3D | G3DSA:1.20.5.4130 | - | 172 | 292 | 2.4E-14 | - |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 1278 | 1332 | 5.5E-11 | IPR036576 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 660 | 1002 | 2.4E-13 | IPR032675 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 1100 | 1175 | 5.2E-22 | IPR036576 |
| Gene3D | G3DSA:1.10.10.10 | - | 567 | 659 | 6.1E-12 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 339 | 494 | 1.1E-28 | IPR027417 |
| SMART | SM00774 | WRKY_cls | 1113 | 1174 | 1.4E-34 | IPR003657 |
| SMART | SM00774 | WRKY_cls | 1286 | 1332 | 2.4E-12 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 1280 | 1328 | 12.621759 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 1114 | 1170 | 18.819553 | IPR003657 |
| PRINTS | PR00364 | Disease resistance protein signature | 831 | 847 | 2.9E-13 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 539 | 553 | 2.9E-13 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 370 | 385 | 2.9E-13 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 442 | 456 | 2.9E-13 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1208 | 1241 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1208 | 1235 | - | - |
| Coils | Coil | Coil | 89 | 109 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46710.1 | NB-ARC domain-containing disease resistance protein. | 0 |
| RefSeq | XP_047047367.1 | disease resistance protein RGA5-like [Lolium rigidum] | 0 |
| F7J0N2 | Disease resistance protein RGA5 OS=Oryza sativa subsp. japonica OX=39947 GN=RGA5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453LJ22 | AAA domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology