Basic Information
Locus ID:
Pt_Chr0701131
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the SKP1 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 22811832 | 22815103 | - | Pt_Chr0701131 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.09 | 39,940.30 Da | 49.41 | 96.90 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01466 | Skp1 family, dimerisation domain | 313 | 355 | 8.7E-15 | IPR016072 |
| Pfam | PF01466 | Skp1 family, dimerisation domain | 267 | 303 | 6.7E-9 | IPR016072 |
| SUPERFAMILY | SSF81382 | Skp1 dimerisation domain-like | 258 | 302 | 1.1E-7 | IPR036296 |
| SUPERFAMILY | SSF81382 | Skp1 dimerisation domain-like | 311 | 355 | 2.09E-9 | IPR036296 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 246 | 307 | 1.1E-10 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 308 | 358 | 1.5E-13 | IPR011333 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42190.1 | E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein. Similar to SKP1 in yeast and humans which are involved in mitotic cell cycle control and ubiquitin mediated proteolysis. | 0 |
| RefSeq | XP_020704428.1 | SKP1-like protein 1 [Dendrobium catenatum] | 0 |
| Q9FHW7 | SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A498JV31 | SKP1-like protein OS=Malus domestica OX=3750 GN=DVH24_009989 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0102400, Pt_Chr0701131 |