Basic Information
Locus ID:
Pt_Chr0701113
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 22414851 | 22416757 | - | Pt_Chr0701113 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.83 | 22,412.74 Da | 49.93 | 89.53 | 0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 167 | 210 | 6.41275E-17 | - |
| Pfam | PF13639 | Ring finger domain | 167 | 210 | 1.5E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 154 | 213 | 3.53E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 132 | 214 | 1.2E-23 | IPR013083 |
| SMART | SM00184 | ring_2 | 168 | 209 | 1.9E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 168 | 210 | 12.946621 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G17730.1 | NEP-interacting protein 2. Intrinsic thylakoid membrane protein that fixes RPOTmp on the stromal side of the thylakoid membrane. | 0 |
| RefSeq | XP_044401751.1 | NEP1-interacting protein 2-like [Triticum aestivum] | 0 |
| Q8GT74 | NEP1-interacting protein 2 OS=Arabidopsis thaliana OX=3702 GN=NIP2 PE=1 SV=1 | 0 | |
| TrEMBL | M8D810 | RING-H2 finger protein ATL2B OS=Aegilops tauschii OX=37682 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.2HG0107700.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_007291, gene-QYE76_007292, gene-QYE76_016691 |
| Poaceae | Oryza coarctata | 2 | Oco17G010830, Oco18G010760 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g37050.1 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0304173, Pt_Chr0502424, Pt_Chr0701112, Pt_Chr0701113 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G909300, Tel5E01G532800 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG000620 |
| Poaceae | Triticum aestivum | 5 | TraesCS2A02G081500.1.cds1, TraesCS2D02G079500.1.cds1 ... |