Basic Information
Locus ID:
Pt_Chr0701110
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 22218783 | 22224331 | - | Pt_Chr0701110 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.28 | 65,896.24 Da | 52.11 | 77.70 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 19 | 54 | 6.4E-6 | IPR001810 |
| Pfam | PF12937 | F-box-like | 315 | 350 | 1.2E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 313 | 389 | 4.06E-9 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 10 | 53 | 2.35E-8 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 18 | 57 | 3.2E-6 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 314 | 352 | 1.4E-6 | - |
| SMART | SM00256 | fbox_2 | 316 | 357 | 9.6E-6 | IPR001810 |
| SMART | SM00256 | fbox_2 | 20 | 61 | 0.0081 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_047052045.1 | uncharacterized protein LOC124657559 [Lolium rigidum] | 0 |
| TrEMBL | I1HF39 | F-box domain-containing protein OS=Brachypodium distachyon OX=15368 GN=BRADI_2g12360v3 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0501220.1.CDS1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_007281, gene-QYE76_007282, gene-QYE76_007284 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0701110 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G279100 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5BG053220 |
| Poaceae | Triticum aestivum | 9 | TraesCS3A02G151500.1.cds1, TraesCS3B02G178500.1.cds1 ... |