Basic Information
Locus ID:
Pt_Chr0701109
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 22201704 | 22203371 | - | Pt_Chr0701109 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.91 | 58,695.80 Da | 82.14 | 74.70 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 326 | 370 | 8.73623E-30 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 326 | 373 | 1.6E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 324 | 375 | 1.39E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 312 | 415 | 1.2E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 328 | 368 | 1.0E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 328 | 369 | 13.979331 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 343 | 352 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 114 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 483 | 555 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 383 | 406 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 66 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 487 | 547 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_047047959.1 | uncharacterized protein LOC124652952 isoform X2 [Lolium rigidum] | 0 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453RWN5 | RING-type E3 ubiquitin transferase OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH08.409, BH08.418, CH08.493 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0618500, gene-QOZ80_8BG0646000 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0695010.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_007280, gene-QYE76_017957 |
| Poaceae | Oryza coarctata | 2 | Oco15G002730, Oco16G002750 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g06510.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G054600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0701109 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr20G011530, Chr29G011080 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G511100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG041150, gene_TRIDC7BG031060 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G296500.1, TraesCS7B02G189000.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb130470_P001, Zm00001eb340170_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-39018, nbis-gene-41664 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g22520, Zma_g22521, Zma_g23657 |