Basic Information
Locus ID:
Pt_Chr0700951
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 18657199 | 18658250 | + | Pt_Chr0700951 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.45 | 35,228.74 Da | 52.17 | 93.48 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07707 | BTB And C-terminal Kelch | 83 | 158 | 1.4E-5 | IPR011705 |
| Pfam | PF00651 | BTB/POZ domain | 14 | 60 | 3.5E-4 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 8 | 61 | 5.76E-6 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 6 | 95 | 2.0E-7 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 96 | 197 | 1.4E-5 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61600.1 | POZ/BTB containin G-protein 1. POZ/BTB containing-protein AtPOB1 | 0 |
| RefSeq | XP_037435835.1 | BTB/POZ domain-containing protein POB1-like [Triticum dicoccoides] | 0 |
| Q9FPW6 | BTB/POZ domain-containing protein POB1 OS=Arabidopsis thaliana OX=3702 GN=POB1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A453LM02 | BACK domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0505050.1, HORVU.MOREX.r3.5HG0505080.1 |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_007033, gene-QYE76_007066, gene-QYE76_007067 ... |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0402061, Pt_Chr0700949, Pt_Chr0700950, Pt_Chr0700951 |
| Poaceae | Thinopyrum elongatum | 3 | Tel5E01G574500, Tel5E01G575100, Tel5E01G575200 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC5AG052540, gene_TRIDC5AG052560 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS5A02G359000.1, TraesCS5A02G359400.1 ... |