Basic Information
Locus ID:
Pt_Chr0700938
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 18377717 | 18387278 | + | Pt_Chr0700938 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.67 | 22,000.92 Da | 60.46 | 77.19 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 86 | 174 | 9.49773E-36 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 86 | 174 | 4.5E-30 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 78 | 174 | 2.01E-32 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 58 | 181 | 2.3E-36 | IPR016135 |
| SMART | SM00212 | ubc_7 | 85 | 196 | 3.7E-14 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 82 | 196 | 35.216713 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 157 | 173 | - | IPR023313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
| Coils | Coil | Coil | 77 | 97 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25760.1 | peroxin4. mutant displays sucrose-dependent seedling development and reduced lateral root production. PEX4 interacts with PEX22 in a yeast two-hybrid. Necessary for peroxisome biogenesis. The PEX4 and PEX22 pair may be important during the remodeling of peroxisome matrix contents as glyoxysomes transition to leaf peroxisomes. | 0 |
| RefSeq | XP_004953202.1 | protein PEROXIN-4 [Setaria italica] | 0 |
| Q8LGF7 | Protein PEROXIN-4 OS=Arabidopsis thaliana OX=3702 GN=PEX4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453LLQ0 | UBC core domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg23863, jg36729 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22378 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah016873 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12552, Sbi_jg53391 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8540 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011497 |
| Amaranthaceae | Suaeda glauca | 23 | Sgl00770, Sgl05775, Sgl13219, Sgl18434, Sgl31635, Sgl32010 ... |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000008838, gene:ENSEOMG00000046620 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0007690, CQ.Regalona.r1.8AG0007700 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30253550 |
| Apiaceae | Apium graveolens | 1 | Ag7G01884 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103696073 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.442.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G29976 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G25760.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005728m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g21860.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g078160.2N, BniB07g039660.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G2285 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl07G2483, Cgl07G2488 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g12100 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0341s00014.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g25260 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.787 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00025884 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G05240, Lb1G05243 |
| Poaceae | Echinochloa crus-galli | 4 | BH05.638, BH07.2548, CH05.738, CH07.2607 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5AG0401030 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0504760.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_007120, gene-QYE76_023880 |
| Poaceae | Oryza coarctata | 2 | Oco03G016110, Oco04G016820 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g42314.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G205200 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0204082, Pt_Chr0700938, Pt_Chr0700941 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr01G011000, Chr12G025930, Chr22G012500 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G571800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG052270, gene_TRIDC5BG056570 |
| Poaceae | Triticum aestivum | 2 | TraesCS5A02G357500.1, TraesCS5B02G360000.1 |
| Poaceae | Zea mays | 4 | Zm00001eb185480_P001, Zm00001eb185530_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-17930 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g27882 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.959, evm.TU.LG20.917 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g22580 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.1187 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-27365 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20660 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.752 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001291 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9721 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1008 |
| Salicaceae | Populus euphratica | 2 | populus_peu04885, populus_peu12771 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132600337 |
| Solanaceae | Solanum chilense | 1 | SOLCI004965100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002980 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_17226 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G0362 |
| Zosteraceae | Zostera marina | 1 | Zosma05g13540.v3.1 |