Basic Information
Locus ID:
Pt_Chr0700719
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
DNA binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 13956259 | 13964711 | - | Pt_Chr0700719 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.55 | 152,998.69 Da | 41.35 | 80.74 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14798 | RX-CC_like | 17 | 142 | 7.15307E-10 | IPR038005 |
| Pfam | PF03106 | WRKY DNA -binding domain | 1015 | 1074 | 6.4E-25 | IPR003657 |
| Pfam | PF00931 | NB-ARC domain | 190 | 430 | 1.4E-38 | IPR002182 |
| Pfam | PF03106 | WRKY DNA -binding domain | 1172 | 1232 | 6.7E-21 | IPR003657 |
| Pfam | PF18052 | Rx N-terminal domain | 14 | 99 | 3.0E-11 | IPR041118 |
| SUPERFAMILY | SSF52058 | L domain-like | 508 | 876 | 2.58E-19 | - |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 1011 | 1075 | 7.59E-24 | IPR036576 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 1165 | 1233 | 6.28E-20 | IPR036576 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 175 | 443 | 3.17E-53 | IPR027417 |
| Gene3D | G3DSA:1.20.5.4130 | - | 10 | 149 | 9.1E-15 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 175 | 333 | 5.4E-28 | IPR027417 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 1156 | 1234 | 8.6E-22 | IPR036576 |
| Gene3D | G3DSA:1.10.10.10 | - | 423 | 521 | 5.8E-13 | IPR036388 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 525 | 904 | 2.9E-19 | IPR032675 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 1000 | 1076 | 4.8E-26 | IPR036576 |
| SMART | SM00774 | WRKY_cls | 1171 | 1234 | 1.3E-30 | IPR003657 |
| SMART | SM00774 | WRKY_cls | 1014 | 1076 | 7.2E-38 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 1166 | 1230 | 17.063513 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 1009 | 1072 | 22.572664 | IPR003657 |
| PRINTS | PR00364 | Disease resistance protein signature | 377 | 391 | 1.5E-15 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 280 | 294 | 1.5E-15 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 732 | 748 | 1.5E-15 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 208 | 223 | 1.5E-15 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1111 | 1143 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1296 | 1322 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1111 | 1137 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46710.1 | NB-ARC domain-containing disease resistance protein. | 0 |
| RefSeq | XP_047047367.1 | disease resistance protein RGA5-like [Lolium rigidum] | 0 |
| F7J0N2 | Disease resistance protein RGA5 OS=Oryza sativa subsp. japonica OX=39947 GN=RGA5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453LJ22 | AAA domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology