Basic Information
Locus ID:
Pt_Chr0700706
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Broad-Complex, Tramtrack and Bric a brac
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 13719997 | 13721604 | + | Pt_Chr0700706 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.34 | 60,169.21 Da | 46.32 | 77.29 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 199 | 330 | 2.41332E-27 | IPR002083 |
| CDD | cd18280 | BTB_POZ_BPM_plant | 353 | 465 | 8.80207E-48 | - |
| CDD | cd00121 | MATH | 39 | 137 | 4.18751E-18 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 359 | 466 | 4.5E-25 | IPR000210 |
| Pfam | PF00917 | MATH domain | 35 | 137 | 0.0048 | IPR002083 |
| Pfam | PF00917 | MATH domain | 219 | 329 | 7.5E-4 | IPR002083 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 196 | 336 | 8.18E-33 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 345 | 467 | 8.63E-30 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 36 | 143 | 4.41E-23 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 197 | 334 | 1.4E-28 | IPR008974 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 18 | 141 | 6.2E-21 | IPR008974 |
| Gene3D | G3DSA:1.25.40.420 | - | 467 | 534 | 4.4E-19 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 343 | 462 | 8.8E-34 | IPR011333 |
| SMART | SM00061 | math_3 | 203 | 312 | 0.0014 | IPR002083 |
| SMART | SM00225 | BTB_4 | 367 | 468 | 1.3E-24 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 367 | 435 | 17.33456 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 198 | 329 | 18.549938 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 39 | 136 | 8.577833 | IPR002083 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19000.1 | BTB-POZ and MATH domain 1. | 0 |
| RefSeq | XP_051177645.1 | BTB/POZ and MATH domain-containing protein 1-like [Lolium perenne] | 0 |
| Q8L765 | BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6MZY1 | Speckle-type POZ protein-like protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology