Basic Information
Locus ID:
Pt_Chr0700641
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 11919883 | 11923596 | + | Pt_Chr0700641 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.07 | 78,117.69 Da | 68.45 | 66.72 | -0.97 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 636 | 676 | 9.68746E-22 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 634 | 681 | 6.0E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 636 | 682 | 3.83E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 614 | 688 | 2.1E-14 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 637 | 676 | 10.807436 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 404 | 421 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 247 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 295 | 353 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 58 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 353 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 377 | 396 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 222 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 247 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 59 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 368 | 423 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 309 | 329 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_020160645.1 | uncharacterized protein LOC109745943 [Aegilops tauschii subsp. strangulata] | 0 |
| TrEMBL | A0A3B6JD47 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology