Basic Information
Locus ID:
Pt_Chr0700596
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Lectin-domain containing receptor kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 10545432 | 10547253 | - | Pt_Chr0700596 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.43 | 54,259.57 Da | 64.11 | 82.22 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 412 | 446 | 1.7E-6 | IPR001810 |
| Pfam | PF00646 | F-box domain | 4 | 34 | 1.1E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 411 | 478 | 1.07E-13 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 1 | 55 | 1.27E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 408 | 447 | 1.3E-7 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 41 | 4.5E-5 | - |
| SMART | SM00256 | fbox_2 | 411 | 451 | 0.31 | IPR001810 |
| SMART | SM00256 | fbox_2 | 4 | 47 | 0.16 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 46 | 8.543671 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051228509.1 | uncharacterized protein LOC127346016 [Lolium perenne] | 0 |
| TrEMBL | A0A8I6YHG4 | F-box domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 7 | gene-QYE76_005916, gene-QYE76_057805, gene-QYE76_057806 ... |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0700543, Pt_Chr0700596 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G813100, Tel3E01G813200 |
| Poaceae | Triticum aestivum | 4 | TraesCS1A02G433200.1.cds1, TraesCS1B02G469100.1.cds1 ... |