Basic Information
Locus ID:
Pt_Chr0700312
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Helicase associated domain (HA2) Add an annotation
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 5385911 | 5395959 | - | Pt_Chr0700312 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.06 | 196,753.78 Da | 45.20 | 88.75 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17917 | DEXHc_RHA-like | 271 | 428 | 4.04328E-51 | - |
| CDD | cd18791 | SF2_C_RHA | 433 | 602 | 6.18026E-63 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 475 | 594 | 9.5E-15 | IPR001650 |
| Pfam | PF04408 | Helicase associated domain (HA2) | 655 | 749 | 4.0E-10 | IPR007502 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 1691 | 1735 | 3.1E-6 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 1610 | 1670 | 7.3E-8 | IPR002867 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 246 | 770 | 1.58E-68 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1536 | 1615 | 1.41E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 1690 | 1739 | 3.88E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 1620 | 1676 | 2.3E-6 | - |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 1074 | 1193 | 2.8E-6 | IPR035979 |
| Gene3D | G3DSA:3.40.50.300 | - | 432 | 613 | 8.5E-54 | IPR027417 |
| Gene3D | G3DSA:1.20.120.1080 | - | 636 | 742 | 2.0E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1532 | 1617 | 1.1E-7 | IPR013083 |
| Gene3D | G3DSA:3.40.50.300 | - | 239 | 431 | 3.9E-61 | IPR027417 |
| Gene3D | G3DSA:1.20.120.1750 | - | 1665 | 1745 | 4.0E-14 | - |
| SMART | SM00487 | ultradead3 | 253 | 438 | 2.5E-30 | IPR014001 |
| SMART | SM00647 | ibrneu5 | 1671 | 1735 | 0.041 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 1605 | 1670 | 6.1E-6 | IPR002867 |
| SMART | SM00490 | helicmild6 | 496 | 594 | 1.0E-19 | IPR001650 |
| SMART | SM00847 | ha2_5 | 654 | 750 | 1.7E-11 | IPR007502 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1538 | 1580 | 9.317383 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 1534 | 1742 | 28.279734 | IPR044066 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 265 | 429 | 19.292582 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 469 | 634 | 15.582938 | IPR001650 |
| ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 1722 | 1743 | - | IPR013087 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 1554 | 1563 | - | IPR017907 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 371 | 380 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| Coils | Coil | Coil | 181 | 201 | - | - |
| Coils | Coil | Coil | 1402 | 1422 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G01020.1 | helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_047058220.1 | ATP-dependent RNA helicase DEAH12, chloroplastic-like [Lolium rigidum] | 0 |
| P0CE10 | ATP-dependent RNA helicase DEAH11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g01020 PE=3 SV=1 | 0 | |
| TrEMBL | A0A3B6ED00 | Helicase ATP-binding domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg17052 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16894 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026708 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g138750 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg12768, Sbi_jg53124, Sbi_jg53129, Sbi_jg5761 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg13485, Seu_jg8752 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013519 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl34220, Sgl39518, Sgl39563 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000002562 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6BG0019900, CQ.Regalona.r1.9AG0000080 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30203470 |
| Apiaceae | Apium graveolens | 1 | Ag3G01671 |
| Arecaceae | Cocos nucifera | 4 | COCNU_02G007090, COCNU_03G007140, COCNU_05G005500 ... |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103696124, gene-LOC103701784 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.1863.V1.1, AsparagusV1_08.3177.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G25441 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G01020.1, AT5G10370.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012419m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g33080.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g033430.2N, BniB02g051570.2N, BniB08g004790.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1977 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2086 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g12230 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g12520 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4375 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2482 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026396 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb5G27896, Lb8G36379 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3736, BH03.4015, CH03.4283 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_7AG0577610 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0124060.1, HORVU.MOREX.r3.5HG0440160.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_039487, gene-QYE76_050226 |
| Poaceae | Oryza coarctata | 2 | Oco13G012990, Oco14G013680 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G353800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0700312 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr19G002040, Chr24G015030, Chr27G015190, Chr28G011940 |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G323900, Tel3E01G192000, Tel5E01G151700 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC2AG020750, gene_TRIDC3AG013700 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS2A02G164100.1, TraesCS2B02G190100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb327760_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-23578, nbis-gene-344 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g26536 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.260, evm.TU.LG25.1054 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g29810 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1290 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-3939, nbisL1-mrna-3973 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17314 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18726 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.452 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005543 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12354 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23201 |
| Salicaceae | Populus euphratica | 3 | populus_peu01442, populus_peu13728, populus_peu24188 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132612644, gene-LOC132613750 |
| Solanaceae | Solanum chilense | 2 | SOLCI000030600, SOLCI006111000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107004738, gene-LOC107017803 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_15627, gene_3486 |
| Tamaricaceae | Tamarix chinensis | 3 | TC09G0173, TC11G0701, TC11G0703 |
| Zosteraceae | Zostera marina | 2 | Zosma04g19990.v3.1, Zosma05g20540.v3.1 |