Basic Information
Locus ID:
Pt_Chr0700307
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 5207082 | 5210854 | - | Pt_Chr0700307 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.15 | 44,724.73 Da | 42.16 | 75.25 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 117 | 152 | 2.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 239 | 273 | 0.0037 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 278 | 313 | 5.8E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 115 | 404 | 9.77E-44 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 179 | 411 | 1.4E-34 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 110 | 178 | 1.8E-8 | IPR015943 |
| SMART | SM00320 | WD40_4 | 364 | 401 | 290.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 192 | 229 | 47.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 236 | 273 | 1.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 276 | 313 | 2.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 113 | 152 | 4.6E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 120 | 161 | 14.284707 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 243 | 276 | 10.759232 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 243 | 282 | 13.983944 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 120 | 157 | 11.154684 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 260 | 274 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 300 | 314 | 5.6E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 139 | 153 | 5.6E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 260 | 274 | 5.6E-8 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 92 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51980.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_051223371.1 | zinc finger CCCH domain-containing protein 17-like [Lolium perenne] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3B6EFP1 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology