Basic Information
Locus ID:
Pt_Chr0700176
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 2747585 | 2759723 | + | Pt_Chr0700176 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 218,844.81 Da | 48.97 | 98.46 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16491 | RING-CH-C4HC3_LTN1 | 1900 | 1949 | 2.97665E-33 | IPR039804 |
| Pfam | PF13639 | Ring finger domain | 1901 | 1949 | 1.7E-7 | IPR001841 |
| SUPERFAMILY | SSF48371 | ARM repeat | 118 | 925 | 9.36E-13 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1894 | 1952 | 6.1E-12 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 115 | 404 | 8.9E-8 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1882 | 1952 | 2.9E-10 | IPR013083 |
| SMART | SM00184 | ring_2 | 1902 | 1948 | 3.6E-4 | IPR001841 |
| SMART | SM00744 | ringv_2 | 1901 | 1949 | 0.002 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1902 | 1949 | 12.297489 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 63 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G58410.2 | - | 0 |
| RefSeq | XP_051189653.1 | E3 ubiquitin-protein ligase listerin isoform X1 [Lolium perenne] | 0 |
| Q9FGI1 | E3 ubiquitin-protein ligase listerin OS=Arabidopsis thaliana OX=3702 GN=At5g58410 PE=3 SV=1 | 0 | |
| TrEMBL | A0A453ML72 | E3 ubiquitin-protein ligase listerin OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg8399 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9243 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah015016 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g190980 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg24730, Sbi_jg8592, Sbi_jg8593 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg20013, Seu_jg21641 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022678 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl40720, Sgl42720, Sgl42721, Sgl47456 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010868, gene:ENSEOMG00000032293 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0016740, CQ.Regalona.r1.8BG0017770 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30292460 |
| Apiaceae | Apium graveolens | 1 | Ag11G04062 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G013000 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103702083 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.642.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G24248 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G58410.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012416m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g20090.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g037790.2N, BniB08g013230.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1791 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1852 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g14500 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0170s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g31830 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.601 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00016389 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G14813 |
| Poaceae | Echinochloa crus-galli | 6 | AH04.230, AH05.148, BH04.224, BH05.173, CH04.241, CH05.227 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0536080.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_006933 |
| Poaceae | Oryza coarctata | 3 | Oco02G032550, Oco06G000010, Oco06G000020 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g74610.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G038000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0700176, Pt_Chr0700363 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr07G021640, Chr31G000700 |
| Poaceae | Thinopyrum elongatum | 4 | Tel3E01G916900, Tel3E01G917000, Tel5E01G875100 ... |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG048770, gene_TRIDC5BG082160 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G322600.1, TraesCS5B02G555800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb093280_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-46397, nbis-gene-55467 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25476 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2518, evm.TU.LG23.743 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g34080 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.641 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-30424 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17396 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16025 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.362 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015462 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4284 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15150 |
| Salicaceae | Populus euphratica | 1 | populus_peu18578 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132634871 |
| Solanaceae | Solanum chilense | 1 | SOLCI007368000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031066 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_2613 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0009 |
| Zosteraceae | Zostera marina | 1 | Zosma02g21930.v3.1 |