Basic Information
Locus ID:
Pt_Chr0700135
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 2123297 | 2126601 | - | Pt_Chr0700135 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.29 | 58,078.48 Da | 40.78 | 77.17 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 32 | 67 | 1.1E-4 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 150 | 245 | 4.32E-10 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 21 | 81 | 4.32E-10 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 150 | 281 | 1.2E-8 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 28 | 88 | 4.7E-7 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 293 | 310 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 310 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38392.1 | - | 0 |
| RefSeq | XP_047057973.1 | uncharacterized protein LOC124664514 [Lolium rigidum] | 0 |
| TrEMBL | A0A3B6C0U7 | F-box domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology