Basic Information
Locus ID:
Pt_Chr0605940
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 181437268 | 181438560 | - | Pt_Chr0605940 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.52 | 33,121.49 Da | 58.82 | 65.94 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13499 | EF-hand domain pair | 239 | 302 | 1.5E-13 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 166 | 229 | 1.5E-13 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 96 | 156 | 4.6E-13 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 92 | 157 | 3.42E-19 | IPR011992 |
| SUPERFAMILY | SSF47473 | EF-hand | 164 | 303 | 9.52E-44 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 18 | 160 | 6.6E-22 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 233 | 306 | 8.3E-24 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 161 | 232 | 1.6E-24 | - |
| SMART | SM00054 | efh_1 | 277 | 305 | 2.3E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 204 | 232 | 2.3E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 97 | 125 | 1.8E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 133 | 161 | 0.0012 | IPR002048 |
| SMART | SM00054 | efh_1 | 168 | 196 | 4.4E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 241 | 269 | 2.9E-4 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 164 | 199 | 15.685013 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 237 | 272 | 15.433954 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 93 | 128 | 14.48551 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 200 | 235 | 13.955498 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 273 | 308 | 13.955498 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 129 | 163 | 10.440677 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 286 | 298 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 250 | 262 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 106 | 118 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 177 | 189 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 213 | 225 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 43 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 95 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G24620.1 | EF hand calcium-binding protein family. | 0 |
| RefSeq | XP_051228239.1 | probable calcium-binding protein CML10 [Lolium perenne] | 0 |
| Q8RZB5 | Probable calcium-binding protein CML10 OS=Oryza sativa subsp. japonica OX=39947 GN=CML10 PE=2 SV=1 | 0 | |
| TrEMBL | A0A077S7T5 | Calcium-binding protein CML10 OS=Triticum aestivum OX=4565 GN=TRAES_3BF103100010CFD_c1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology