Basic Information
Locus ID:
Pt_Chr0605857
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Cupin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 180117518 | 180119530 | - | Pt_Chr0605857 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 39,217.36 Da | 27.79 | 89.92 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02243 | cupin_11S_legumin_C | 214 | 368 | 7.38845E-76 | - |
| CDD | cd02242 | cupin_11S_legumin_N | 14 | 187 | 5.75707E-57 | - |
| Pfam | PF00190 | Cupin | 212 | 354 | 6.3E-21 | IPR006045 |
| Pfam | PF00190 | Cupin | 18 | 170 | 4.7E-23 | IPR006045 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 20 | 360 | 6.81E-47 | IPR011051 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 18 | 193 | 5.9E-28 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 211 | 371 | 6.8E-49 | IPR014710 |
| SMART | SM00835 | Cupin_1_3 | 211 | 355 | 6.2E-15 | IPR006045 |
| SMART | SM00835 | Cupin_1_3 | 13 | 173 | 1.0E-25 | IPR006045 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 332 | 349 | 3.1E-13 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 310 | 328 | 3.1E-13 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 274 | 290 | 3.1E-13 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 292 | 307 | 3.1E-13 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 227 | 247 | 3.1E-13 | IPR006044 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28680.1 | RmlC-like cupins superfamily protein. | 0 |
| RefSeq | XP_047061350.1 | 11S globulin seed storage protein 2-like [Lolium rigidum] | 0 |
| Q8GZP6 | 11S globulin seed storage protein Ana o 2.0101 (Fragment) OS=Anacardium occidentale OX=171929 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6ER75 | 11S seed storage protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology