Basic Information
Locus ID:
Pt_Chr0605854
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 180074848 | 180094443 | + | Pt_Chr0605854 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 195,595.13 Da | 53.15 | 77.14 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 1273 | 1310 | 3.1E-6 | IPR001810 |
| Pfam | PF00646 | F-box domain | 7 | 43 | 1.4E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 7 | 87 | 2.88E-9 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 1274 | 1338 | 2.88E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1273 | 1310 | 5.4E-7 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 6 | 47 | 1.8E-6 | - |
| SMART | SM00256 | fbox_2 | 7 | 47 | 5.5E-6 | IPR001810 |
| SMART | SM00256 | fbox_2 | 1274 | 1314 | 1.1E-8 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 704 | 729 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1144 | 1165 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 834 | 870 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1140 | 1176 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 836 | 865 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 704 | 736 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_047053327.1 | uncharacterized protein LOC124659501 [Lolium rigidum] | 0 |
| TrEMBL | A0A3B6EUN1 | F-box domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0108092, Pt_Chr0605854 |