Basic Information
Locus ID:
Pt_Chr0605767
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 178336444 | 178340045 | - | Pt_Chr0605767 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.30 | 85,332.23 Da | 44.85 | 81.85 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 11 | 41 | 0.0016 | IPR001810 |
| Pfam | PF00646 | F-box domain | 383 | 412 | 1.1E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 375 | 414 | 2.35E-8 | IPR036047 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 184 | 275 | 2.09E-5 | IPR011043 |
| SUPERFAMILY | SSF81383 | F-box domain | 11 | 42 | 1.7E-5 | IPR036047 |
| SUPERFAMILY | SSF75011 | 3-carboxy-cis,cis-mucoante lactonizing enzyme | 420 | 664 | 4.05E-7 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 381 | 415 | 7.6E-7 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 8 | 54 | 5.9E-6 | - |
| SMART | SM00256 | fbox_2 | 380 | 420 | 3.6E-4 | IPR001810 |
| SMART | SM00256 | fbox_2 | 8 | 50 | 0.39 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 469 | 668 | 1.0E-13 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051222159.1 | F-box protein At2g43440-like [Lolium perenne] | 0 |
| TrEMBL | A0A3B5ZZA5 | FBA_3 domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology