Basic Information
Locus ID:
Pt_Chr0605675
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
helicase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 175708742 | 175717937 | + | Pt_Chr0605675 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.35 | 128,481.58 Da | 52.93 | 89.40 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 94 | 128 | 0.002 | IPR001810 |
| Pfam | PF00646 | F-box domain | 656 | 689 | 5.8E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 652 | 696 | 2.22E-9 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 805 | 986 | 2.2E-9 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 239 | 440 | 2.33E-5 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 91 | 134 | 8.63E-8 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 644 | 694 | 2.3E-5 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 769 | 998 | 9.4E-9 | IPR032675 |
| SMART | SM00256 | fbox_2 | 97 | 138 | 1.1 | IPR001810 |
| SMART | SM00256 | fbox_2 | 659 | 700 | 0.0089 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 653 | 700 | 10.027357 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 91 | 138 | 9.312009 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 545 | 580 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 557 | 571 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32020.1 | F-box family protein. | 0 |
| RefSeq | XP_047080252.1 | uncharacterized protein LOC124690995 [Lolium rigidum] | 0 |
| Q9C6W9 | Putative F-box protein At1g32020 OS=Arabidopsis thaliana OX=3702 GN=At1g32020 PE=4 SV=1 | 0 | |
| TrEMBL | A0A3B6LHK0 | F-box domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0604604, Pt_Chr0604609, Pt_Chr0605670, Pt_Chr0605675 |