Basic Information
Locus ID:
Pt_Chr0605649
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 175201619 | 175208350 | - | Pt_Chr0605649 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.14 | 86,537.51 Da | 64.66 | 66.04 | -0.86 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 720 | 760 | 1.09151E-20 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 718 | 765 | 1.9E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 712 | 766 | 9.03E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 709 | 771 | 2.9E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 721 | 760 | 10.822189 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 474 | 490 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 249 | 264 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 474 | 507 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 206 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 224 | 264 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 491 | 505 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 125 | 139 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 149 | 185 | - | - |
| Coils | Coil | Coil | 475 | 495 | - | - |
| Coils | Coil | Coil | 84 | 104 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_051191949.1 | uncharacterized protein LOC127305521 isoform X3 [Lolium perenne] | 0 |
| Q0MW30 | E3 ubiquitin-protein ligase NEURL1B OS=Mus musculus OX=10090 GN=Neurl1b PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6NVJ5 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology