Basic Information
Locus ID:
Pt_Chr0605438
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
von Willebrand factor type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 169316294 | 169319750 | - | Pt_Chr0605438 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 66,629.00 Da | 36.39 | 86.79 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13768 | von Willebrand factor type A domain | 3 | 142 | 3.4E-10 | IPR002035 |
| SUPERFAMILY | SSF53300 | vWA-like | 2 | 155 | 6.43E-14 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 1 | 159 | 2.5E-19 | IPR036465 |
| Gene3D | G3DSA:1.20.5.340 | - | 532 | 601 | 3.5E-5 | - |
| Coils | Coil | Coil | 535 | 569 | - | - |
| Coils | Coil | Coil | 490 | 517 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G38970.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_051222155.1 | uncharacterized protein LOC127340448 [Lolium perenne] | 0 |
| TrEMBL | A0A5J9U4J9 | VWFA domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_34098 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 8 | AH05.388, AH05.865, AH05.867, BH01.4317, BH01.4319, BH05.448 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_9AG0670800, gene-QOZ80_9AG0675400 ... |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_039716, gene-QYE76_058228, gene-QYE76_058230 ... |
| Poaceae | Oryza coarctata | 2 | Oco09G001520, Oco09G001530 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0605438, Pt_Chr0605787 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-18273, nbis-gene-53961, nbis-gene-53963 ... |
| Poaceae | Zoysia macrostachya | 1 | Zma_g17598 |