Basic Information
Locus ID:
Pt_Chr0605387
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Domain of unknown function (DUF4283)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 168457835 | 168465255 | - | Pt_Chr0605387 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.70 | 117,603.76 Da | 41.00 | 75.76 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17939 | DEADc_EIF4A | 689 | 885 | 3.32941E-103 | - |
| CDD | cd18787 | SF2_C_DEAD | 897 | 1025 | 2.40407E-31 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 910 | 1013 | 2.9E-13 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 732 | 869 | 1.2E-22 | IPR011545 |
| Pfam | PF14111 | Domain of unknown function (DUF4283) | 84 | 227 | 3.8E-22 | IPR025558 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 752 | 1033 | 1.47E-46 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 891 | 1054 | 2.5E-34 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 671 | 890 | 2.1E-46 | IPR027417 |
| SMART | SM00487 | ultradead3 | 704 | 898 | 2.0E-25 | IPR014001 |
| SMART | SM00490 | helicmild6 | 937 | 1018 | 1.6E-5 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 896 | 1055 | 14.188706 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 716 | 884 | 18.852463 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 830 | 838 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 513 | 532 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 533 | 557 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 356 | 382 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 352 | 388 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 475 | 557 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 425 | 445 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 422 | 445 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.1 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_047079349.1 | ATP-dependent RNA helicase DRS1-like [Lolium rigidum] | 0 |
| Q0E2Q3 | Putative eukaryotic initiation factor 4A-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0221300 PE=3 SV=2 | 0 | |
| TrEMBL | A0A0Q3F7A0 | DUF4283 domain-containing protein OS=Brachypodium distachyon OX=15368 GN=100844278 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology