Basic Information
Locus ID:
Pt_Chr0605381
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Pyridoxal-phosphate dependent enzyme
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 168332085 | 168335892 | - | Pt_Chr0605381 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.74 | 20,283.17 Da | 36.14 | 88.68 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF53686 | Tryptophan synthase beta subunit-like PLP-dependent enzymes | 2 | 159 | 8.91E-18 | IPR036052 |
| Gene3D | G3DSA:3.40.50.1100 | - | 1 | 17 | 2.0E-6 | IPR036052 |
| Gene3D | G3DSA:3.40.50.1100 | - | 73 | 149 | 2.1E-12 | IPR036052 |
| Gene3D | G3DSA:3.40.50.1100 | - | 18 | 62 | 2.0E-6 | IPR036052 |
KEGG Pathway
Pathway:
ko00270 (Cysteine and methionine metabolism)
map00270 (Cysteine and methionine metabolism)
ko00920 (Sulfur metabolism)
map00920 (Sulfur metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01120 (Microbial metabolism in diverse environments)
map01120 (Microbial metabolism in diverse environments)
ko01200 (Carbon metabolism)
map01200 (Carbon metabolism)
ko01230 (Biosynthesis of amino acids)
map01230 (Biosynthesis of amino acids)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G14880.1 | O-acetylserine (thiol) lyase (OAS-TL) isoform A1. Encodes a cytosolic isoform of cytosolic O-acetylserine(thiol)lyase, a key enzyme in cysteine biosynthesis and for the fixation of inorganic sulfide. It catalyzes the formation of cysteine from O-acetylserine and inorganic sulfide. Gene expression is predominant in the root cortex and the xylem parenchyma. Gene expression is induced in leave, stems and roots by high salt and heavy metal stresses, mediated by ABA. Lines carrying semi-dominant mutations exhibit early senescence. | 0 |
| RefSeq | XP_044952078.1 | cysteine synthase-like isoform X1 [Hordeum vulgare subsp. vulgare] | 0 |
| O23733 | Cysteine synthase OS=Brassica juncea OX=3707 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8I6YC29 | PALP domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology