Basic Information
Locus ID:
Pt_Chr0605380
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Leucine rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 168327341 | 168330302 | - | Pt_Chr0605380 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.11 | 89,940.79 Da | 32.90 | 99.78 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 233 | 255 | 0.57 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 115 | 135 | 0.016 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 65 | 78 | 0.5 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 87 | 101 | 1.8 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 466 | 524 | 1.7E-6 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 636 | 788 | 1.9E-17 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 64 | 223 | 4.87E-33 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 180 | 539 | 1.41E-43 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 690 | 810 | 1.0E-15 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 624 | 689 | 8.0E-9 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 268 | 557 | 2.0E-67 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 55 | 177 | 1.1E-28 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 178 | 267 | 4.2E-19 | IPR032675 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 115 | 137 | 7.234511 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 582 | 812 | 9.517142 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25930.1 | Protein kinase family protein with leucine-rich repeat domain. | 0 |
| RefSeq | XP_044950937.1 | receptor-like protein kinase HSL1 isoform X1 [Hordeum vulgare subsp. vulgare] | 0 |
| C0LGF5 | LRR receptor-like serine/threonine-protein kinase RGI5 OS=Arabidopsis thaliana OX=3702 GN=RGI5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8I7BHP3 | Protein kinase domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology