Basic Information
Locus ID:
Pt_Chr0605368
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
phosphatase 2A 55 kDa regulatory subunit B'
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 167975785 | 167983934 | + | Pt_Chr0605368 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.82 | 65,168.28 Da | 55.48 | 73.31 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 302 | 338 | 0.17 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 117 | 582 | 1.1E-33 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 166 | 588 | 1.2E-26 | IPR015943 |
| SMART | SM00320 | WD40_4 | 182 | 222 | 58.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 299 | 338 | 0.94 | IPR001680 |
| SMART | SM00320 | WD40_4 | 450 | 504 | 290.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 349 | 389 | 17.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 109 | 144 | 7.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 411 | 446 | 340.0 | IPR001680 |
| PIRSF | PIRSF037309 | PPA2_B55 | 88 | 590 | 3.1E-191 | IPR000009 |
| ProSitePatterns | PS01024 | Protein phosphatase 2A regulatory subunit PR55 signature 1. | 182 | 196 | - | IPR018067 |
| ProSitePatterns | PS01025 | Protein phosphatase 2A regulatory subunit PR55 signature 2. | 308 | 322 | - | IPR018067 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 395 | 422 | 3.3E-154 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 451 | 476 | 3.3E-154 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 366 | 394 | 3.3E-154 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 559 | 588 | 3.3E-154 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 310 | 337 | 3.3E-154 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 477 | 503 | 3.3E-154 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 423 | 450 | 3.3E-154 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 169 | 197 | 3.3E-154 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 123 | 143 | 3.3E-154 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 338 | 365 | 3.3E-154 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 198 | 226 | 3.3E-154 | IPR000009 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 258 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 67 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko03015 (mRNA surveillance pathway)
map03015 (mRNA surveillance pathway)
ko04071 (Sphingolipid signaling pathway)
map04071 (Sphingolipid signaling pathway)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
ko04390 (Hippo signaling pathway)
map04390 (Hippo signaling pathway)
ko04391 (Hippo signaling pathway - fly)
map04391 (Hippo signaling pathway - fly)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17720.1 | Protein phosphatase 2A, regulatory subunit PR55. type 2A protein serine/threonine phosphatase 55 kDa B | 0 |
| RefSeq | XP_048533461.1 | LOW QUALITY PROTEIN: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Triticum urartu] | 0 |
| A2X2K3 | Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Oryza sativa subsp. indica OX=39946 GN=OsI_006296 PE=2 SV=2 | 0 | |
| TrEMBL | M8BYT5 | Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B OS=Aegilops tauschii OX=37682 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology